PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0040s0052.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 199aa    MW: 22391.6 Da    PI: 10.0163
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0040s0052.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.36.4e-0684106123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C+k F r  nL+ H r H
  Kaladp0040s0052.1.p  84 FVCEICSKGFQRDQNLQLHRRGH 106
                          89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.56E-583106No hitNo description
Gene3DG3DSA:3.30.160.601.8E-583106IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.88784106IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SuperFamilySSF576671.56E-5156181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MFSSKLPNFS EEAAAPASVS SSDKINIAHH HEFGTLNPSS SQIPSTNLDQ PVKTKKKRNL  60
PGNPDPDAEV IALSPKTLLA TNRFVCEICS KGFQRDQNLQ LHRRGHNLPW KLKQRSSNDV  120
VRKRAYVCPE PTCVHHHPSR ALGDLTGIKK HFCRKHGEKK WKCEKCCKIY AVQSDWKAHS  180
KTCGTREYRC DCGTLFSR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007050479.11e-104Indeterminate(ID)-domain 12
SwissprotQ8H1F54e-97IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A061DRD11e-104A0A061DRD1_THECC; Indeterminate(ID)-domain 12
STRINGPOPTR_0002s04880.16e-99(Populus trichocarpa)
STRINGGLYMA10G03541.15e-99(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.18e-86C2H2 family protein